Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Adipocyte
Cell type
Adipose stromal cell
NA
NA

Attributes by original data submitter

Sample

source_name
hASC, ChIP
cell type
Adipose stromal cell (ASC) adipocyte
chip epitope
CTCF
chip antibody
Upstate, Cat# 07-729, Lot# 1350637

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
22333925
Reads aligned (%)
52.2
Duplicates removed (%)
16.2
Number of peaks
38723 (qval < 1E-05)

hg19

Number of total reads
22333925
Reads aligned (%)
51.9
Duplicates removed (%)
16.8
Number of peaks
38537 (qval < 1E-05)

Base call quality data from DBCLS SRA